PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG561900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 391aa    MW: 40832.4 Da    PI: 6.9093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG561900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.3e-15195241455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+++Lq
  Pavir.3KG561900.2.p 195 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 241
                          5999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-19195250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-12196241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17196250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-15196245No hitNo description
SMARTSM003535.1E-17197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDRHMEDSST FLQWAMNQLH HQHPSAAAAA AAASAYHDGA GAGDREAIFP SLHALRRGAG  60
QTQSSQQPVA ASVRVRDLTV QVDHLTNSSS SGDSPGAGDA MDHDAAAGWS PHTARSRTTG  120
LGGGGGGGNN WPVSWNFSAA SAQPTRESGG GGALPDAAVA ARVVQLASAG RRGSSSAAPP  180
AATAAASSSP GPVQDHIIAE RRRREKINQR FIELSTVIPG LKKMDKATIL GDAVKYVREL  240
QEKVKTLEED GAHSAGGSSI QSAVLVKKPC HHLPGDEAMA SSNGGGAGGV QLPEIEARLS  300
EKSVLLRIHC YNARGLLVRV ISEVEQMHLS ITHTNVMPFP ASTAIITITA KVEEGFTATV  360
DEIVRSINSV LHQHYSSSSE EKEDTKVDYC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204ERRRRE
2200205RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963288.11e-176PREDICTED: transcription factor MYC3-like isoform X1
TrEMBLK3Z6K21e-176K3Z6K2_SETIT; Uncharacterized protein
STRINGSi022171m1e-175(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-43bHLH family protein